I firmly believe that most of this type of issue is nothing to do with the discs at all - most are perfect and it would take an awful lot to warp them.
Before you change anything or go tinkering with the discs - perform this test :
- Find a nice straight stretch of quiet road
- Drive to about 100kph
- Stand hard on your brakes and bring yourself to near standstill (without locking the wheels of course)
- Do this 3 or 4 times
If you still have a serious judder then you may have a disc problem - if not, you have solved your problem
Let us know how you get on.